Helmholtz Zentrum München - German Research Center for Environmental Health

Element Report

Name: AT1G20510.1
Element type:transcript
Description:OPC-8:0 CoA ligase1
Comment:OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213; Bacteria - 55131; Metazoa - 3605; Fungi - 4761; Plants - 2762; Viruses - 1; Other Eukaryotes - 18229 (source: NCBI BLink).
Contig:chr1_pseudomolecule_TAIR9

Gene features
Size (bp):2428
Spliced size (bp):1857
Start:7105881
Stop:7103454
Subelements:
TypeStartStopSize
5'UTR12525
exon112291229
exon13181463146
exon1872193968
exon20152428414
3'UTR22382428191
Related elements:Group List
Evidences:Evidence List

References
Confidence:TAIR ath release 10.0
Publications:PubMed
External links:TAIR
References:GO database
GO database
GO database
GO database
GO database

Gene family information
Show orthologous gene family: Gene family

Sequence report for AT1G20510.1
View sequence: CDS
spliced
unspliced
Protein

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