Helmholtz Zentrum München - German Research Center for Environmental Health

Element Report

Name: AT1G80490.1
Element type:transcript
Description:TOPLESS-related 1
Comment:TOPLESS-related 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Contig:chr1_pseudomolecule_TAIR9

Gene features
Size (bp):6108
Spliced size (bp):3724
Start:30267038
Stop:30260931
Subelements:
TypeStartStopSize
5'UTR1592592
exon1139139
exon531672142
exon745924180
exon10071279273
exon13721549178
exon16671790124
exon19332039107
exon21512322172
exon24192528110
exon2615268470
exon2755282874
exon2907300296
exon3100319596
exon32943421128
exon35263760235
exon38413981141
exon4078414063
exon42284374147
exon44434553111
exon46354814180
exon49055129225
exon52125400189
exon54875653167
exon57326108377
3'UTR59466108163
Related elements:Group List
Evidences:Evidence List

References
Confidence:TAIR ath release 10.0
Publications:PubMed
External links:TAIR
References:GO database
GO database

Gene family information
Show orthologous gene family: Gene family

Sequence report for AT1G80490.1
View sequence: CDS
spliced
unspliced
Protein

Download
Genetic element download:Download Form
Web Start (help)
Web Service(WSDL)

Navigable Viewer
JBrowse