Helmholtz Zentrum München - German Research Center for Environmental Health

Element Report

Name: AT3G16830.1
Element type:transcript
Description:TOPLESS-related 2
Comment:TOPLESS-related 2 (TPR2); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 3 (TAIR:AT5G27030.1); Has 13436 Blast hits to 8919 proteins in 512 species: Archae - 16; Bacteria - 3246; Metazoa - 4126; Fungi - 2976; Plants - 1389; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Contig:chr3_pseudomolecule_TAIR9

Gene features
Size (bp):6239
Spliced size (bp):3812
Start:5731534
Stop:5737772
Subelements:
TypeStartStopSize
5'UTR1175175
exon1255255
exon341520180
exon600713114
exon802960159
exon10441221178
exon13111443133
exon15801695116
exon18201952133
exon20352144110
exon2324239370
exon2497256771
exon2652274796
exon2816290893
exon29953122128
exon32503484235
exon35893747159
exon3844393996
exon40414190150
exon42874397111
exon45204696177
exon48194947129
exon5051514696
exon52425424183
exon55035678176
exon57766239464
3'UTR59996239241
Related elements:Group List
Evidences:Evidence List

References
Confidence:TAIR ath release 10.0
Publications:PubMed
External links:TAIR
References:GO database
GO database
GO database

Gene family information
Show orthologous gene family: Gene family

Sequence report for AT3G16830.1
View sequence: CDS
spliced
unspliced
Protein

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