Sequence search (BLAST)
IPK provides a Blast server for the different barley sequence collections:
- sortedChromosomes: 454 read bins for each chromosome arm (~8G, ~25 mio reads)
- BACEndSequences: 571,814 BES sequences, ~400 Mb, 304,523 BAC clones
- BAC_contigs: 454-sequenced BAC clones, ~79,000 contigs, 442 Mb, 3,566 BAC clones
- assembly1_morex_rbca: 30x WGS assembly, ~50 % of the sequence amount could be assigned to a chromosome arm by RBCA (read based chromosome assignment)
The % symbol can be used as wildcard for the search.