Helmholtz Zentrum München - German Research Center for Environmental Health

Search

Sequence search (BLAST)

IPK provides a Blast server for the different barley sequence collections:

  • sortedChromosomes: 454 read bins for each chromosome arm (~8G, ~25 mio reads)
  • BACEndSequences: 571,814 BES sequences, ~400 Mb, 304,523 BAC clones
  • BAC_contigs: 454-sequenced BAC clones, ~79,000 contigs, 442 Mb, 3,566 BAC clones
  • assembly1_morex_rbca: 30x WGS assembly, ~50 % of the sequence amount could be assigned to a chromosome arm by RBCA (read based chromosome assignment)


Search for fingerprinted Contigs (Fpcontig)

Your input: e.g. contig_20





Search for sequenced BAC clones (sBAC)

Your input: e.g. HVVMRXALLeA0131C06




Search Genetic Marker for Given Contig Position and Map

Chromosome:

Start (Abs. Distance in cm)

Stop (Abs. Distance in cm)

Map Name:




Search for Genetic Marker by Marker ID

Your input: e.g. 1_1477, 1_0634



The % symbol can be used as wildcard for the search.

-->