Helmholtz Zentrum München - German Research Center for Environmental Health

Arabidopsis thaliana (Arabidopsis thaliana Ensembl Instance)
Provider:EMBL-EBI (EMBL European Bioinformatics Institute)
Resource:Ensembl Plants (Ensembl Plants is a genome-centric portal for plant species of scientific interest. It utilises reference genome sequences as a framework to integrate variant, functional, expression, marker and comparative data through a consistent set of interactive and programmatic interfaces.)
Organism:Arabidopsis thaliana (Thale cress)
URL:http://plants.ensembl.org/Arabidopsis_thaliana
Release:TAIR 10
Source URL:http://www.arabidopsis.org/
Last Update:Ensembl Plants release 29 - October 2015
Data type:genomic,genome sequence,gene sequence,transcript sequence,gene tree,whole genome alignment,functional genomics,variation,variation effect,fasta,gff3,gtf,embl,genbank,vcf,ftp
Tools:ensembl,genome,browser,compara,vep,variation,effect,predictor,assembly,converter,biomart,blast,sequence,search,download,api,rest,perl
Keywords:ensembl,genomes,comparative,analysis,visualisation,integration
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Description of the fields (ReadMe)
Provider: Details of the data providers institution (such as research center, university, etc.).
Resource: Details of the particular resource provided. This will be a system name such as Phytozome.
Organism: Scientific (and common) species name. This can contain more than one entry.
URL: Primary URL of the particular instance. (Should point to the entry page of the instance such as to the Arabidopsis thal. entry page in Phytozome.)
Release: This field can hold a release or version tag for the data within an instance. Often this will be an annotation or assembly version, such as TAIR10.
Source URL: This field can hold a source URL for the data within an instance. Often the data within an instance are derivative and were obtained from another primary resource. This URL can then point towards the original data resource.
Last Update: This field can hold a release version or last update data for the instance and/or resource. Many resources are built in releases (such as TAIR or Phytozome in version 8.0) or updated regularly.
Data type: This field describes the type of data that is stored or provided from an instance, such as genomic, variation or expression.
Tools: This field can hold the names of useful tools provided within the instance or resources such as GBrowse.
Keywords: Keywords for search.

 

The transPLANT project is funded by the European Commission within its 7th Framework Programme, under the thematic area "Infrastructures", contract number 283496.

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