Helmholtz Zentrum München - German Research Center for Environmental Health

DAS server (Ensembl Plants provides a DAS reference server which gives access to genomic sequences, genes, transcripts, and, where available, karyotypes. A list of the sources currently served may be found using the standard DAS dsn or sources request.)
Provider:EMBL-EBI (EMBL European Bioinformatics Institute)
Resource:Ensembl Plants (Ensembl Plants is a genome-centric portal for plant species of scientific interest. It utilises reference genome sequences as a framework to integrate variant, functional, expression, marker and comparative data through a consistent set of interactive and programmatic interfaces.)
Organism:Aegilops tauschii,Amborella trichopoda,Arabidopsis lyrata,Arabidopsis thaliana,Brachypodium distachyon,Brassica rapa,Chlamydomonas reinhardtii,Cyanidioschyzon merolae,Glycine max,Hordeum vulgare,Medicago truncatula,Musa acuminata,Oryza barthii,Oryza brachyantha,Oryza glaberrima,Oryza glumaepatula,Oryza indica,Oryza meridionalis,Oryza nivara,Oryza punctata,Oryza sativa,Physcomitrella patens,Populus trichocarpa,Prunus persica,Selaginella moellendorffii,Setaria italica,Solanum lycopersicum,Solanum tuberosum,Sorghum bicolor,Triticum aestivum,Triticum urartu,Vitis vinifera,Zea mays
URL:http://plants.ensembl.org/das/sources
Release:
Source URL:
Last Update:Ensembl Plants release 29 - October 2015
Data type:genomic sequences,genes,transcripts,karyotypes
Tools:das
Keywords:ensembl,genomes,das
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Description of the fields (ReadMe)
Provider: Details of the data providers institution (such as research center, university, etc.).
Resource: Details of the particular resource provided. This will be a system name such as Phytozome.
Organism: Scientific (and common) species name. This can contain more than one entry.
URL: Primary URL of the particular instance. (Should point to the entry page of the instance such as to the Arabidopsis thal. entry page in Phytozome.)
Release: This field can hold a release or version tag for the data within an instance. Often this will be an annotation or assembly version, such as TAIR10.
Source URL: This field can hold a source URL for the data within an instance. Often the data within an instance are derivative and were obtained from another primary resource. This URL can then point towards the original data resource.
Last Update: This field can hold a release version or last update data for the instance and/or resource. Many resources are built in releases (such as TAIR or Phytozome in version 8.0) or updated regularly.
Data type: This field describes the type of data that is stored or provided from an instance, such as genomic, variation or expression.
Tools: This field can hold the names of useful tools provided within the instance or resources such as GBrowse.
Keywords: Keywords for search.

 

The transPLANT project is funded by the European Commission within its 7th Framework Programme, under the thematic area "Infrastructures", contract number 283496.

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