html> Databases available for ViroBLAST

Databases available for ViroBLAST

CDS sequence databases

AegilopsTauschii_BGI_CDS.fa
Coding sequences from Aegilops tauschii, published by BGI (Jia et al., 2013)

ArabidopsisLyrata_MIPS_V1.0_CDS.fa
Coding sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisLyrata_MIPS_V1.0_CDS.fa
Coding sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisThaliana_TAIR10_CDS.fa
Coding sequences from Arabidopsis thaliana, release TAIR10

BrachypodiumDistachyon_MIPS_V1.2_CDS.fa
Coding sequences from Brachypodium distachyon, as published by Brachy. Initiative, 2010

HordeumVulgare_IBSC2012_CDS.fa
Coding sequences from Hordeum vulgare, as published by IBSC, 2013

MedicagoTruncatula_IMGAGv4.0_CDS.fa
Coding sequences from Medicago truncatula, release IMGAG v4.0

OryzaSativa_RGAPv7_CDS.fa
Coding sequences from Oryza sativa, release RGAPv7

PopulusTrichocarpa_JGI_V3.0_CDS.fa
Coding sequences from Populus trichocarpa, release JGI V3.0

SolanumLycopersicum_ITAGv2.3_CDS.fa
Coding sequences from Solanum lycopersicum, release ITAGv2.3

SorghumBicolor_MIPS_V1.4_CDS.fa
Coding sequences from Sorghum bicolor, as published by Paterson et al., 2009

SpirodelaPolyrhiza_MIPS_V2.0_CDS.fa
Coding sequences from Spirodela polyrhiza, as published by Wang et al., 2014

TriticumAestivum_IWGSCv2.2_CDS.fa
Coding sequences from Triticum aestivum, as published by IWGSC 2014

TriticumAestivum_IWGSCv2.2_CDSunmap.fa
Coding sequences from Triticum aestivum, not mapped to a chromosome and/or subgenome, as published by IWGSC 2014

TriticumDurumItal_MIPS_V2.0_CDS.fa
Coding sequences from Triticum durum, unpublished

TriticumUrartu_BGI_CDS.fa
Coding sequences from Triticum urartu, published by BGI (Ling et al., 2013)

ZeaMays_AGPv3_CDS.fa
Coding sequences from Zea mays, release AGP v3

Protein sequence databases

AegilopsTauschii_BGI_PEP.fa
Protein sequences from Aegilops tauschii, published by BGI (Jia et al., 2013)

ArabidopsisLyrata_MIPS_V1.0_PEP.fa
Protein sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisLyrata_MIPS_V1.0_PEP.fa
Protein sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisThaliana_TAIR10_PEP.fa
Protein sequences from Arabidopsis thaliana, release TAIR10

BrachypodiumDistachyon_MIPS_V1.2_PEP.fa
Protein sequences from Brachypodium distachyon, as published by Brachy. Initiative, 2010

HordeumVulgare_IBSC2012_PEP.fa
Protein sequences from Hordeum vulgare, as published by IBSC, 2013

MedicagoTruncatula_IMGAGv4.0_PEP.fa
Protein sequences from Medicago truncatula, release IMGAG v4.0

OryzaSativa_RGAPv7_PEP.fa
Protein sequences from Oryza sativa, release RGAPv7

PopulusTrichocarpa_JGI_V3.0_PEP.fa
Protein sequences from Populus trichocarpa, release JGI V3.0

SolanumLycopersicum_ITAGv2.3_PEP.fa
Protein sequences from Solanum lycopersicum, release ITAGv2.3

SorghumBicolor_MIPS_V1.4_PEP.fa
Protein sequences from Sorghum bicolor, as published by Paterson et al., 2009

SpirodelaPolyrhiza_MIPS_V2.0_PEP.fa
Protein sequences from Spirodela polyrhiza, as published by Wang et al., 2014

TriticumAestivum_IWGSCv2.2_PEP.fa
Protein sequences from Triticum aestivum, as published by IWGSC 2014

TriticumAestivum_IWGSCv2.2_PEPunmap.fa
Protein sequences from Triticum aestivum, not mapped to a chromosome and/or subgenome, as published by IWGSC 2014

TriticumDurumItal_MIPS_V2.0_PEP.fa
Protein sequences from Triticum durum, unpublished

TriticumUrartu_BGI_PEP.fa
Protein sequences from Triticum urartu, published by BGI (Ling et al., 2013)

ZeaMays_AGPv3_PEP.fa
Protein sequences from Zea mays, release AGP v3

Genomic sequence databases

AegilopsTauschii_BGI_GENOMICmasked.fa
Genomic sequences from Aegilops tauschii, published by BGI (Jia et al., 2013)

ArabidopsisLyrata_MIPS_V1.0_GENOMIC.fa
Genomic sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisLyrata_MIPS_V1.0_GENOMIC.fa
Genomic sequences from Arabidopsis tauschii, published by Hu et al., 2011

ArabidopsisThaliana_TAIR10_GENOMIC.fa
Genomic sequences from Arabidopsis thaliana, release TAIR10

BrachypodiumDistachyon_MIPS_V1.2_GENOMIC.fa
Genomic sequences from Brachypodium distachyon, as published by Brachy. Initiative, 2010

HordeumVulgare_IBSC2012_GENOMIC.fa
Genomic sequences from Hordeum vulgare, as published by IBSC, 2013

MedicagoTruncatula_IMGAGv4.0_GENOMIC.fa
Genomic sequences from Medicago truncatula, release IMGAG v4.0

OryzaSativa_RGAPv7_GENOMIC.fa
Genomic sequences from Oryza sativa, release RGAPv7

PopulusTrichocarpa_JGI_V3.0_GENOMIC.fa
Genomic sequences from Populus trichocarpa, release JGI V3.0

SolanumLycopersicum_ITAGv2.3_GENOMIC.fa
Genomic sequences from Solanum lycopersicum, release ITAGv2.3

SorghumBicolor_MIPS_V1.4_GENOMIC.fa
Genomic sequences from Sorghum bicolor, as published by Paterson et al., 2009

SpirodelaPolyrhiza_MIPS_V2.0_GENOMIC.fa
Genomic sequences from Spirodela polyrhiza, as published by Wang et al., 2014

TriticumAestivum_IWGSCv2.2_GENOMICmasked.fa
Genomic sequences (masked) from Triticum aestivum, as published by IWGSC 2014

TriticumDurumItal_MIPS_V2.0_GENOMIC.fa
Genomic sequences from Triticum durum, unpublished

TriticumUrartu_BGI_GENOMICmasked.fa
Genomic sequences (masked) from Triticum urartu, published by BGI (Ling et al., 2013)

ZeaMays_AGPv3_GENOMIC.fa
Genomic sequences from Zea mays, release AGP v3